Resume

SRAKE tracks ingestion progress and can resume from the last checkpoint after interruption.

How it works

During ingestion, SRAKE periodically saves progress (processed files, record counts, byte offsets) to the state directory (~/.local/state/srake/resume/). If the process is interrupted, running the same command again detects the previous progress and offers to resume.

Usage

# Start ingestion
srake ingest --file archive.tar.gz

# If interrupted, run the same command again
srake ingest --file archive.tar.gz
# Detects previous progress and resumes from last checkpoint

Force a fresh start

srake ingest --file archive.tar.gz --force

Resume with filters

Filters are preserved across resume:

# Original command
srake ingest --auto --taxon-ids 9606 --platforms ILLUMINA

# Resume applies the same filters
srake ingest --auto --taxon-ids 9606 --platforms ILLUMINA

State files

Resume state is stored in ~/.local/state/srake/resume/ (or $SRAKE_STATE_HOME/resume/). These files are safe to delete if you want to force a clean start without using --force.

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